PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014039-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 89aa    MW: 10287.5 Da    PI: 8.8625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014039-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-111257244
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           g+WT++E +l+ +a +++ ++   +W+ +ar +g g++++++k+++
  SMil_00014039-RA_Salv 12 GSWTQQENKLFEKALARFDTEtpdRWHNVARAVGGGKSAEEVKLHY 57
                           89*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-5961IPR009057Homeodomain-like
PROSITE profilePS5129310.891965IPR017884SANT domain
SMARTSM007171.4E-91063IPR001005SANT/Myb domain
PfamPF002494.2E-91257IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-131269IPR009057Homeodomain-like
CDDcd001677.81E-61357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASGSLSSHR SGSWTQQENK LFEKALARFD TETPDRWHNV ARAVGGGKSA EEVKLHYEIL  60
IEDLRRIESG YVPIPKYKKT SVEEEKRYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2414881187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836815.13e-42PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1733e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A4D9C6J13e-51A0A4D9C6J1_SALSN; Uncharacterized protein
STRINGMigut.B00229.1.p1e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-29RAD-like 6