PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013929-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 174aa    MW: 19635.1 Da    PI: 6.2863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013929-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19653253
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                           +++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  SMil_00013929-RA_Salv  6 KFRGVRQRH-WGSWVAEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 53
                           89******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-33563IPR001471AP2/ERF domain
CDDcd000189.24E-33665No hitNo description
SuperFamilySSF541716.54E-21664IPR016177DNA-binding domain
SMARTSM003802.3E-38669IPR001471AP2/ERF domain
PfamPF008478.2E-13650IPR001471AP2/ERF domain
PROSITE profilePS5103222.221663IPR001471AP2/ERF domain
PRINTSPR003679.5E-11718IPR001471AP2/ERF domain
PRINTSPR003679.5E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVEKRKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPVAGNVEE SSSEAPFSSI ISEKLRKCCK SPSPSVTCLR LDNESSHIGV WQKRAGSDSD  120
ANWVMTIQLG NKDIINDDRS RGGAAAPEVL TAEFRDERDE EEKIALQMIE ELMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16570470ATERF1
3gcc_A3e-16570470ATERF1
5wx9_A4e-162631072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254403.11e-79PREDICTED: ethylene-responsive transcription factor WIN1-like
RefseqXP_010925213.13e-79ethylene-responsive transcription factor WIN1
SwissprotQ9XI337e-77WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A4D8YK122e-92A0A4D8YK12_SALSN; Uncharacterized protein
STRINGXP_010254403.14e-79(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-65ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]