PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013284-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 262aa    MW: 30365.3 Da    PI: 7.2954
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013284-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.47e-31251162101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F +k+++i++d+++++++sw +ng+sf+++d+ +f+ ++Lp+yF+h+nf+SFv QLn YgF+k+  +++        we++ ++F++g
  SMil_00013284-RA_Salv  25 FSTKTFQIVNDAHTNSIVSWAQNGHSFIIWDHIKFSAQILPNYFRHNNFSSFVYQLNNYGFRKIGVDHQ--------WEYSSPHFQQG 104
                            889**************************************************************9994........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            k +ll+++kr++
  SMil_00013284-RA_Salv 105 KPHLLSNMKRRS 116
                            **********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-4321115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-2822115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3123115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-162548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-2825115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-167688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSREVGGVDY DRNVAARRFG PPPLFSTKTF QIVNDAHTNS IVSWAQNGHS FIIWDHIKFS  60
AQILPNYFRH NNFSSFVYQL NNYGFRKIGV DHQWEYSSPH FQQGKPHLLS NMKRRSLQMS  120
PTPPRQKNSL SPDTLRKSIE ESRREMKKLK QQKSDMELKM VELRQTANNL EATTKKLIVQ  180
WAKACEMMVK VEEEDAAEPL VLPSPADDES KSAAILRVED YSVELDNMDK RDQVYEVEAP  240
NQHAIAIAQD FQVWLNEINA LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A4e-25231158110Heat shock factor protein 2
5hdk_B4e-25231158110Heat shock factor protein 2
5hdk_C4e-25231158110Heat shock factor protein 2
5hdk_D4e-25231158110Heat shock factor protein 2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8Y8Q42e-90A0A4D8Y8Q4_SALSN; Heat shock transcription factor, other eukaryote
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1687534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.19e-35heat shock transcription factor A9