PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012652-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 630aa    MW: 70466.7 Da    PI: 6.6507
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012652-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.5e-16156231190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA++ GFs+ + + +++k +g i++ +f Cs e +++++ ++              C+a+l+++++++g+w+vtk++++HnH+
  SMil_00012652-RA_Salv 156 EFYDSYARQEGFSTHVGQYTRNKPDGPIVSWEFFCSSEVFKRKNVES--------------CNAMLQIERKDTGTWVVTKFVEDHNHS 229
                            6****************************************998877..............**************************9 PP

                   FAR1  89 la 90 
                            ++
  SMil_00012652-RA_Salv 230 IV 231
                            86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-13156231IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.202337373IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-10339371IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-7348375IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MKKRVERAGE GGGWMRSRRA VAVEEEERRS RRGEEERRRV PVRFEPGTGP WPCLVTYPKK  60
EKKLSADHPP PFPPWVSLQI NQHTVELFAG IVWFDEMDNE VVEVDMQKRQ KSREAPTQHG  120
DDEAENLSGI STSQADAGNN KPYVNMEFES QEAAREFYDS YARQEGFSTH VGQYTRNKPD  180
GPIVSWEFFC SSEVFKRKNV ESCNAMLQIE RKDTGTWVVT KFVEDHNHSI VSPSKVHFLR  240
PRRHFAGATK NALPESADNQ NDVMVSVDGN HVLYDSNLVM RNTSPIEANP VAKNMSPAET  300
ISVGRTASCV ETSRATTSSV PVMPLQVAKY EHDHKAYIVI LDVSEMNASC SCQMFEYSGV  360
LCRHILTVFT VTNVLTVPSQ YILKRWTRDA RAGSLDEQDT GVSAESLTVR FNNLCREALK  420
FAEEGAIAVE TYNAAVDALQ EGVRKIALVK KFVAKNMPAT CQSSGNFQDN GSKKAFVTTP  480
DMIPSLWPWQ DALSNRFNLN DAGVPAADLS QPTLASLAIN RDGVLADNTV VLTCFKSMTW  540
VIENKSTASK VALINLKLQD YGKAPSGETE VQFRLTRTTL EPMLKSMAYI SQQLSAPANK  600
VAVINLKVLS SVYEIQFYLS EVLYEARVSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078717.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078718.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078719.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078720.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078721.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078722.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020549440.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020549441.11e-152protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBLA0A200Q0801e-179A0A200Q080_9MAGN; FAR1 DNA binding domain
STRINGMigut.N01873.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-81FAR1-related sequence 3