PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010851-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 353aa    MW: 39393.8 Da    PI: 4.6947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010851-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19119168255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  SMil_00010851-RA_Salv 119 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARRIRG 168
                            69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.999119176IPR001471AP2/ERF domain
SMARTSM003802.4E-37119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-32119177IPR001471AP2/ERF domain
CDDcd000182.05E-32119176No hitNo description
SuperFamilySSF541717.85E-22119177IPR016177DNA-binding domain
PRINTSPR003671.0E-11120131IPR001471AP2/ERF domain
PfamPF008471.5E-11120168IPR001471AP2/ERF domain
PRINTSPR003671.0E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MCGGAIISEI TPPTSLSSRR LTADLLWGSG AAALRKKKNN CNYYSKPLRS RPISDFDDDF  60
EADFQDFEDY SDEEEELDLK KPFAFSAPKN IGVKAHKSLD PAESDEDAEK SSKRKRKNQY  120
RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD IEARRIRGNK AKVNFPKMFQ  180
SLQLQSAHLS MLSNNYYDSL SLMEEKPQMK QYGYGDVGLK PLTPSDGSSV YFSSDQGSNS  240
FGCSDFIWSD NCVKNPEVSS VLTTAVENDD QPLDSDIPRP AKKAKPSPEN MVVPDSSDLS  300
EFDSQMKLFQ MPYLESNWDA SIDALLSGGV NQDGGSALDL WSFDDIAAMG GVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21119176260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.11e-167ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A4D9BEE20.0A0A4D9BEE2_SALSN; EREBP-like factor
STRINGMigut.I01124.1.p1e-153(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.37e-57related to AP2 12