PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009645-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 279aa    MW: 31049.8 Da    PI: 6.9779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009645-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000295072123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C + F++   L  H+++H
  SMil_00009645-RA_Salv 50 YSCSFCRRDFRSAQALGGHMNVH 72
                           99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.32E-64776No hitNo description
PROSITE profilePS5015711.1365077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEEARYWMWA KSKAELNPRM AAYGDSWEEQ AFAEDAAGAL GGCVWPPRSY SCSFCRRDFR  60
SAQALGGHMN VHRRDRARLK QSPNPNTAAE VVPQNHALNP CTSLDAAVPY SSSQICSFLY  120
NNPNPVSPLS HVIRVSSPPT TEEKNTSTLR FFSSNVEKGD PPSWSSFLSE KRDRAVDEKK  180
PADHPDSRVE KEDCVTEDLS MSLNLVRRQR QATNTSSDEE VASCKRRRID EAKPPLSFLP  240
KLGAVERCLP QPEVLKLCSA GAGDELDLEL RLGDAPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A1e-124572229Transcriptional regulator SUPERMAN
1njq_A1e-124572229superman protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094902.11e-116PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A022RMR02e-78A0A022RMR0_ERYGU; Uncharacterized protein
STRINGPOPTR_0016s10460.12e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-27C2H2 family protein