PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009482-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 181aa    MW: 20210.6 Da    PI: 6.7719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009482-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1793143255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdp     k  r++lg+++t  +Aa+a++ a+ k++g
  SMil_00009482-RA_Salv  93 RYRGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTYDTDVDAARAYDCAAFKMRG 143
                            7********.**********8...4445**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2393152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3193151IPR001471AP2/ERF domain
PfamPF008478.0E-1393143IPR001471AP2/ERF domain
PROSITE profilePS5103224.77793151IPR001471AP2/ERF domain
SMARTSM003804.2E-3593157IPR001471AP2/ERF domain
PRINTSPR003674.5E-1394105IPR001471AP2/ERF domain
CDDcd000183.12E-23101151No hitNo description
PRINTSPR003674.5E-13133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTTSDASLTL ELIRQHLLED ADSFFSNVTT LCFSDVYGDE LNALPEIDSP SSGSDLNAVG  60
PDDFETKPQI SSADDDLSPV KPEPEHWSGG GRRYRGVRRR PWGKYAAEIR DPARKGSRVW  120
LGTYDTDVDA ARAYDCAAFK MRGRKAILNF PFDAGKTSPP PNAGRKRRRE RMPARLCEMH  180
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2691152364ATERF1
3gcc_A2e-2691152364ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101099.11e-71ethylene-responsive transcription factor ERF107
SwissprotQ9LY052e-42EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A4D9BQX51e-63A0A4D9BQX5_SALSN; EREBP-like factor
STRINGMigut.F00526.1.p2e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-37ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]