PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008316-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 438aa    MW: 46028.2 Da    PI: 8.5438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008316-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-055375123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  SMil_00008316-RA_Salv 53 FVCEICKKGFQRDQNLQLHRRGH 75
                           89*******************88 PP

2zf-C2H211.50.00096129151123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H + +
  SMil_00008316-RA_Salv 129 WKCDKCSKKYAVQSDWKAHSKIC 151
                            58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.59E-75275No hitNo description
Gene3DG3DSA:3.30.160.608.5E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0395375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6375375IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035522094124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.59E-7124149No hitNo description
SMARTSM00355150129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNDSTASGDD SSGNQAATPK AIPKKKRNLP GMPDPDAEVI ALSPKTLMAT NRFVCEICKK  60
GFQRDQNLQL HRRGHNLPWK LRQRSSKDVK KRVYVCPEPS CVHHEPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFNRKDSF ITHRAFCDAL  180
AEETSKPQPA TAPPSADDGP RIAAVVSPPS PPTSASSPLP LAPLPSEAPT PEDSSATDVV  240
SLVLPDNNPA GFSNLFRSIA CPDPTPAIAP SASSEPIALC LAVNQGSSIF GTAGQERRQY  300
PPAPQPVLSA TALLQKAAQM GAAASNASLL RGLGIVSSSS SPSVSREWSQ QHIESDGSSL  360
AAGLGLGLAC DSGSGLKELM LGTPSIFGPK HTTLDLLGLG MAASGGSTGG LSVLMNGGLD  420
VAAATPFDGR EFGGQDIR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.20.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9LVQ71e-164IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLF6GWY30.0F6GWY3_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-109C2H2-like zinc finger protein