PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007553-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 198aa    MW: 21935.4 Da    PI: 4.5938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007553-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2061111356
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+++AeIrd s++g + r++lg+f+taeeAa a+++a+ +++g+
  SMil_00007553-RA_Salv  61 YRGVRRRP-WGKYAAEIRD-STRG-SVRVWLGTFDTAEEAALAYDQAAFAMRGA 111
                            9*******.**********.4555.7*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-2260120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-3060119IPR001471AP2/ERF domain
PROSITE profilePS5103222.93260118IPR001471AP2/ERF domain
SMARTSM003801.6E-3160124IPR001471AP2/ERF domain
PRINTSPR003671.9E-116172IPR001471AP2/ERF domain
PfamPF008473.0E-1561110IPR001471AP2/ERF domain
CDDcd000189.48E-2261119No hitNo description
PRINTSPR003671.9E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDYSAFNYHS STFSPESSTT TSFDSCLPFN ENDSQEMLLY GVLAEGATAE AATEAAEEVM  60
YRGVRRRPWG KYAAEIRDST RGSVRVWLGT FDTAEEAALA YDQAAFAMRG AAAVLNYPAE  120
VVWESLREMG YYGGGGVEEG CSPVLALKKR HSVRRKSAEA CRKKKELKQT AEVVVLEDLG  180
SDYLEELLTL SENSAFRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2955120974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147164KKRHSVRRKSAEACRKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3595985e-56KT359598.1 Salvia miltiorrhiza ORA1 (ORA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077236.14e-76ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y99e-63ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A4D9B0H47e-86A0A4D9B0H4_SALSN; Pathogenesis-related proteins transcriptional activator PTI5
STRINGVIT_14s0081g00730.t015e-69(Vitis vinifera)
STRINGEMJ074861e-68(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-46ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]