PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005355-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 263aa    MW: 29155 Da    PI: 7.0412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005355-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-2084133255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f++ae Aa a+++a+++++g
  SMil_00005355-RA_Salv  84 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDSAEAAALAYDEAALRFKG 133
                            7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-3283142IPR001471AP2/ERF domain
PROSITE profilePS5103224.76484141IPR001471AP2/ERF domain
CDDcd000182.76E-1984142No hitNo description
PfamPF008477.1E-1484133IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2284142IPR016177DNA-binding domain
SMARTSM003801.1E-3684147IPR001471AP2/ERF domain
PRINTSPR003675.0E-118596IPR001471AP2/ERF domain
PRINTSPR003675.0E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHGKRPLSSN HESDGDDPFS PIYSSARSQI DMSAMVTALS QVLGYTGDNP PESLHQASPP  60
PPPHHTQTQR PLEQGSSANP RRRHYRGVRQ RPWGKWAAEI RDPKKAARVW LGTFDSAEAA  120
ALAYDEAALR FKGNKAKLNF PERVQGRTEF GYLTNGGRGA MPTQTPPPPP PTQENYLNVH  180
HYEDLLRGNS STFSYGNSSS SQGFYGGGPF VSMPMPMAAS SSSLAPASQE DEQREQDFLG  240
FQSHTSAENW EEYETKSTRS YFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2583144466ATERF1
3gcc_A2e-2583144466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073204.18e-63ethylene-responsive transcription factor ERF113
SwissprotQ9FH547e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A4D9AAM01e-107A0A4D9AAM0_SALSN; Uncharacterized protein
STRINGVIT_17s0000g00200.t012e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]