PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004056-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 344aa    MW: 37974.4 Da    PI: 5.5154
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004056-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.15.3e-3280171291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                            fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnH
  SMil_00004056-RA_Salv  80 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKVQESGKWVVSGFVKEHNH 167
                            ****************************************998888545677889********************************* PP

                   FAR1  88 elap 91 
                            el+p
  SMil_00004056-RA_Salv 168 ELVP 171
                            **86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-3080171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MENGVIEFDI GLSGGDDGID IEPPNDDGDI PDGSSNDANS LGSGSGETSF SLQVYIPEGD  60
HDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RKDGAIIQRS FVCAKEGFRN  120
LNEKRTKDRE IKRPRTVTRV GCKASLSVKV QESGKWVVSG FVKEHNHELV PPDQVHCLRS  180
HRQISGPAKT LIDTLQAAGM GPRRIIYNTL RHEAFKFVDE GAESLDSYNV AMAALAEASN  240
KVALGIKNEG KSSLTNGRMR DVSARIGVQA NQCTAEVPGS SAQQLSEDDM DQKINELSMD  300
LDRANRKCEV YRTNLLSLLK DIEDHKQRLS VEVQNIKLSM KDSL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552571.11e-126protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552572.11e-126protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552573.11e-126protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL83e-89FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A445LWN71e-136A0A445LWN7_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRINGMigut.O00582.1.p3e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-80FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]