PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003924-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 687aa    MW: 76822.4 Da    PI: 9.1052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003924-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000237798223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           kC++C++ F ++ n++rH r+H
  SMil_00003924-RA_Salv 77 KCEKCSREFCSPINYRRHTRVH 98
                           7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4527698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MPAAKLCSSG TLNAMKSEEG NDSLDTFIRQ AIGKEPLLPF PRTVDNPVQW IQLLHALDQP  60
DLPGWPLLTP VKVQMQKCEK CSREFCSPIN YRRHTRVHRR SLNINKEWHK NRDLLAAFWD  120
KLSLERAKEV VSFNDIKLKD IAGSSVVKGL ASSLRRPGVW TLPQAYVKAG ATLLDIIQAK  180
PSRLPISSQE LFSILDDASE STFLCAGTAE SVQKYVFDGE TAKNSLELKN LVALASFLFE  240
QLLVKAWIAD KDAEALRCQK LLVEEEEAEQ KRQAVILERK KQKKLRQKEQ RFKEQYYGCS  300
RDLNVYVDAV DRPTSAEASD LSSPSDSNSN SNSQEVPTTL DSVHPQNKEA DEDIEVQFDA  360
SSEQKKQGDS PSVELQMVVA NGHRHVATNR LQVPKSQRGS RYGLHANLNP QTLKHELMHK  420
LGSSKDRSLQ NGNKVWTKKL KSNNDGENLK PPLQEVTSHQ IEQNNGEVII GSIPVTLKSY  480
VDQQQASHPN ETQDTCSTEH AVIKKKNASE KPVKSNYLQS STNRVASRLW RPVSRGETKN  540
VPPVGRSNED PGDSAILSKV HDHTPSNERS GQSQSLDNDG CHNGKQLHVV LDENAQRGFV  600
PFSSEAAKEF LARRWKEAIS GDHVKLVLSS GHEPPGRPDV QHASDPLRSN APNHGENQFG  660
RTIQVHAARK LDKNVKFKYI PKQKTIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277284ERKKQKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076143.10.0PREDICTED: uncharacterized protein LOC105160463 isoform X1
TrEMBLE0CUZ70.0E0CUZ7_VITVI; Putative uncharacterized protein
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein