PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003434-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 95aa    MW: 11061.5 Da    PI: 10.0985
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003434-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-101057146
                           TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                           r +WT    +++ +a +++ ++   +W+ Iar +g g+++ +++ ++  
  SMil_00003434-RA_Salv 10 RSSWTSKQNKQFEEALARYDKDtpeRWHNIARAVG-GKSADEVRRHYEV 57
                           789********************************.**********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.165863IPR017884SANT domain
SMARTSM007178.1E-9961IPR001005SANT/Myb domain
PfamPF002498.0E-81056IPR001005SANT/Myb domain
SuperFamilySSF466896.06E-131266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-61265IPR009057Homeodomain-like
CDDcd001674.03E-51959No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSSLTSSR SSWTSKQNKQ FEEALARYDK DTPERWHNIA RAVGGKSADE VRRHYEVLVK  60
DIMQIETDQV PIPNYRALAR GYAHEQRLMR NLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30695193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.16e-55protein RADIALIS-like 3
SwissprotQ1A1732e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A4D9BCU06e-49A0A4D9BCU0_SALSN; Uncharacterized protein
STRINGMigut.C00747.1.p4e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-31RAD-like 6