PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002578-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 205aa    MW: 21983.4 Da    PI: 8.8184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002578-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-055375123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C++ F ++  L  H++ H
  SMil_00002578-RA_Salv 53 FSCNYCNRKFYSSQALGGHQNAH 75
                           89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-75081No hitNo description
Gene3DG3DSA:3.30.160.608.4E-45179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7185380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MESSSRFDPC TNSETSDTSD LLALDLNLSG QDHGLINLLD KSSAADSSEP RVFSCNYCNR  60
KFYSSQALGG HQNAHKRERT MAKRAGTAAA YTHHDAAAVL GYPSMASLPL YGSNMNRSLG  120
IQVHSMIHKP SFSAYNGRSG WGRRPLDQQP AIGRLAAEVG SSSGGGAARF DGGRRFATAV  180
EGIGGFRWDG GNQDELKKLD LSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082208.13e-81PREDICTED: zinc finger protein 1-like
SwissprotQ424852e-40ZFP1_ARATH; Zinc finger protein 1
TrEMBLB9SMU55e-68B9SMU5_RICCO; Zinc finger protein, putative
STRINGPOPTR_0001s14780.13e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-33C2H2 family protein