PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002346-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 363aa    MW: 40764.8 Da    PI: 9.2467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002346-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05828323
                           ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                           C++C+k F r  nL+ H r H
  SMil_00002346-RA_Salv  8 CEICNKGFQRDQNLQLHRRGH 28
                           *******************88 PP

2zf-C2H212.40.0004782104123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC++C+k +  +s+ k H + +
  SMil_00002346-RA_Salv  82 WKCEKCSKKYAVQSDWKAHSKIC 104
                            58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-7528No hitNo description
SMARTSM003550.11628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551004777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVKKKVYICP EKSCVHHEAS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRK  120
DSFITHRAFC DALAEESARF SSPVASANLN FRNELINTLQ TSGNPQFPML GNLDNMQKPR  180
LPLWLDSANP HLPTANSNNF TLPELVQNQW YGGRDPNQVG VGFINNMNAS SSAIPRVLKE  240
EEENKGNLSE AITSLYYTSN NHSQHETNHM SMSATALLQK AAQMGSTRAT DSSFSAAGFG  300
LISSSFSAGN FKPENLMAAE GSLTRDFLGV GGNDQNRQFM PENELAKFAT GMDMSHNHYS  360
RNE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089318.11e-172PREDICTED: zinc finger protein JACKDAW
SwissprotQ9SCQ61e-99IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A068UF651e-153A0A068UF65_COFCA; Uncharacterized protein
STRINGVIT_06s0004g03070.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-89indeterminate(ID)-domain 2