PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001663-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 126aa    MW: 14336.7 Da    PI: 8.4704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001663-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-056688123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C k+F ++  L  H++ H
  SMil_00001663-RA_Salv 66 FECQYCLKVFVNSQALGGHQNAH 88
                           89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-46292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.26E-76293No hitNo description
PfamPF139121.4E-66690IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0946693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGKNSVSAWS QENSNSNKKL KLFGVEVEQF DDDDNSKGGW LEGDESVNSS GSSTVTDKPE  60
AEDKKFECQY CLKVFVNSQA LGGHQNAHKK ERLRKKRLQL QARKASINCY IQPFYYNNNQ  120
NSDRHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087078.19e-53PREDICTED: zinc finger protein 5
TrEMBLM5XQD41e-37M5XQD4_PRUPE; Uncharacterized protein
STRINGVIT_01s0026g00850.t019e-33(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-11C2H2 family protein