PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001264-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 231aa    MW: 24911.1 Da    PI: 8.8326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001264-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002481103123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C + F ++  L  H++ H
  SMil_00001264-RA_Salv  81 FSCNYCRRKFYSSQALGGHQNAH 103
                            89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-678108No hitNo description
PROSITE profilePS5015711.38581108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MMPPNLNMES EDESEVSSQV ASNASVYSKE ESRNASSCLD DSFKPVVLDL TLGINGCGEP  60
DLKVPTEAVA NHPPPPSSRV FSCNYCRRKF YSSQALGGHQ NAHKRERTLA KRAMRMEMFS  120
DRYASLASLP LHGSAFRSLG IQAHASMHPE HGIRGGGGGG GGVVAELGLL IKATSDCPSI  180
WSTMKGSCRG REASDKWRAS GETRPSTLGS APIWRKGQLH LRGQTSHPFL T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070525.18e-65PREDICTED: zinc finger protein 4
RefseqXP_011070527.18e-65PREDICTED: zinc finger protein 4
RefseqXP_011070528.18e-65PREDICTED: zinc finger protein 4
RefseqXP_011070529.18e-65PREDICTED: zinc finger protein 4
RefseqXP_011070530.18e-65PREDICTED: zinc finger protein 4
RefseqXP_011070531.18e-65PREDICTED: zinc finger protein 4
TrEMBLM1CVW51e-57M1CVW5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000758954e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-28zinc finger protein 4