PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001041-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 180aa    MW: 20812.7 Da    PI: 6.5186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001041-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.55.9e-41181392126
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             pGfrF Pt+eelv++yL++k++g++le+ ++ i+ +diy+++PwdLp     e+++w+fFs+r+    +g r++r t++gyWkatg+
  SMil_00001041-RA_Salv  18 LPGFRFYPTEEELVSFYLHHKLSGTRLEEIDTlIPLLDIYQYNPWDLPLG--LESEQWFFFSQREA---RGGRPSRLTSEGYWKATGS 100
                            69************************8876766***************54..4779******9976...589**************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                              +v+s+ +g+++g k+t+vfy grap+g+kt W m+ey
  SMil_00001041-RA_Salv 101 PGDVYSShNGSVIGRKRTMVFYVGRAPNGTKTPWKMNEY 139
                            *****9978899*************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-4112146IPR003441NAC domain
PROSITE profilePS5100543.1117180IPR003441NAC domain
PfamPF023651.0E-2119139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQNDSHTQLN NMDAIATLPG FRFYPTEEEL VSFYLHHKLS GTRLEEIDTL IPLLDIYQYN  60
PWDLPLGLES EQWFFFSQRE ARGGRPSRLT SEGYWKATGS PGDVYSSHNG SVIGRKRTMV  120
FYVGRAPNGT KTPWKMNEYL PPPNSQPQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-3151392140NO APICAL MERISTEM PROTEIN
1ut4_B6e-3151392140NO APICAL MERISTEM PROTEIN
1ut7_A6e-3151392140NO APICAL MERISTEM PROTEIN
1ut7_B6e-3151392140NO APICAL MERISTEM PROTEIN
4dul_A6e-3151392140NAC domain-containing protein 19
4dul_B6e-3151392140NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842757.13e-56NAC domain-containing protein 90-like
SwissprotQ9FMR35e-44NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2G9GF508e-54A0A2G9GF50_9LAMI; Uncharacterized protein
STRINGXP_004143387.11e-51(Cucumis sativus)
STRINGXP_004171607.11e-51(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-46NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]