PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000158-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 310aa    MW: 34992.8 Da    PI: 8.1022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000158-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07170192123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C+ Cgk F+r  nL+ H+r H
  SMil_00000158-RA_Salv 170 HYCQVCGKGFKRDANLRMHMRAH 192
                            68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-6168195No hitNo description
SMARTSM003550.0034170192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-7170218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653170197IPR007087Zinc finger, C2H2
PfamPF128740.0018171190No hitNo description
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SMARTSM0035575215248IPR015880Zinc finger, C2H2-like
SMARTSM0035541253278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMTNPCYPNG PQNLPIYEEV IDPNSSSPST NPTSFLYNLS LLRNKVEEVQ SLAAMMGQHP  60
ASTAMAISTT MGTLIQEIIV TASSLMFACQ QVSLRPPSPA AFEVQHDAAV AGDHNWYSNC  120
NNINEIHEFG GKIERVEEER GEEEEEDEEA ARSYELVELQ AADLLAKYTH YCQVCGKGFK  180
RDANLRMHMR AHGDEYKSSA ALSNPAKRAE GPRKYSCPQE GCRWNKKHAR FQPLKSMICV  240
KNHYKRSHCP KMYVCKRCNR KHFSVLSDLR THEKHCGHLK WRCSCGTTFS RKDKLMGHVA  300
LFLGHAPAIT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089967.11e-137PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ9C8N53e-81STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A068UFQ01e-137A0A068UFQ0_COFCA; Uncharacterized protein
STRINGSolyc11g066420.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein