PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000084-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 236aa    MW: 24296.8 Da    PI: 9.2498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000084-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001590112123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ykC+ C+k F +   L  H  +H
  SMil_00000084-RA_Salv  90 YKCSVCNKAFGSYQALGGHKASH 112
                            9*********9999998888777 PP

2zf-C2H214.69.7e-05143165123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C+ksF++   L  H r+H
  SMil_00000084-RA_Salv 143 HECSICHKSFPTGQALGGHKRRH 165
                            78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-989165No hitNo description
PROSITE profilePS501579.97290112IPR007087Zinc finger, C2H2
SMARTSM003550.01790112IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-1390114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139122.0E-13142167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536143171IPR007087Zinc finger, C2H2
SMARTSM003550.039143165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MALEALNSPT TAPPSFQFDT AASSLPWSKG KRTKRPRSHE PTEEEYLALC LIMLARGGPT  60
STSASAFAAP QKQAPISPPR PAADPSKQIY KCSVCNKAFG SYQALGGHKA SHRRLSGGGD  120
DHSAASASAA TTSATASGSG RTHECSICHK SFPTGQALGG HKRRHYDGGA PSSNGGGAGS  180
SGVTSSEGAG SSGSLRNFDL NLPALPEFWQ GFGSGADDEV ESPHPLKKSR LSLPAY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074364.11e-100PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-59ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLQ5TJD41e-85Q5TJD4_CATRO; Zinc finger DNA-binding protein
STRINGVIT_18s0001g09230.t015e-78(Vitis vinifera)
STRINGSolyc04g077980.1.18e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.18e-44salt tolerance zinc finger