PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_26542.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 171aa    MW: 18474.9 Da    PI: 8.9195
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_26542.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP29.31.5e-09120156140
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvk 40 
                              r+++sL+llt+kf++l++++e+g+++ln++a++L   +vk
  Sme2.5_26542.1_g00001.1 120 RYDSSLGLLTKKFINLIKHAEDGMLDLNKAADTL---EVK 156
                              6899******************************...443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-9118156IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013720.005120162IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-6122154IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
ALVRSSFALA VCLSNEADYW LLSDADVSIT DMWSHERGVH NCLFQPLKRK SAAANYGQGI  60
ADRNPVSGYA NVNSPMQTPI SGNDAQKVPR TSKARSASQA VTSNVGSPSG NNVTPVGPCR  120
YDSSLGLLTK KFINLIKHAE DGMLDLNKAA DTLEVKCINL VKHAELRRPY S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0128401e-141BT012840.1 Lycopersicon esculentum clone 113908F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362858.12e-67PREDICTED: transcription factor E2FB
TrEMBLM1BQE93e-67M1BQE9_SOLTU; Uncharacterized protein
TrEMBLM1BQF01e-68M1BQF0_SOLTU; Uncharacterized protein
TrEMBLM1BQF23e-67M1BQF2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000505121e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-26E2F transcription factor 1