PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_22262.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 268aa    MW: 30666.1 Da    PI: 5.3903
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_22262.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.52.5e-1792139351
                  G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                               ++Wt++LH++F+++v+qL G+ +  Pk+i elm+ +gLt+ + +SHLQ
  Sme2.5_22262.1_g00001.1  92 YIEWTEDLHAKFMDVVHQL-GEVQCYPKNIHELMNSPGLTRMQAASHLQ 139
                              579****************.9999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1188140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1688139IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-1590140IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
GYLYLKQSFE KEIVKYLWQF VLREKMRSEK EREGLGNNNI VGEDEESREE ESHNIHEVEN  60
DIVLNGRYKP RKKRSRKSMK EINEGKSRRK NYIEWTEDLH AKFMDVVHQL GEVQCYPKNI  120
HELMNSPGLT RMQAASHLQV QPHYLDIDNP FNSSFLSPQP NVGAGLQQDG SLFDFNVVQG  180
ATYPSSRIVS GTHNEYNLNV NVDNMAIYSS SAMMSDTYAG NFTINGLGAI NANTNFQQYV  240
DEPNMSYPRT VVAASCENYV EGNTSNEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165596.13e-44PREDICTED: putative two-component response regulator ARR13
TrEMBLA0A2G3BJZ15e-50A0A2G3BJZ1_CAPCH; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-11G2-like family protein