PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_21447.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 241aa    MW: 27726.3 Da    PI: 6.9477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_21447.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.69e-31209752128
                      NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              k ++kewyfFs rd+kyatg r+nrat sgyWkatgkd++v++  +g+l+g++ktLvfyk+rap+g kt W+mhe+rl
  Sme2.5_21447.1_g00001.1  20 KLNSKEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVFDLqTGALIGMRKTLVFYKNRAPHGIKTGWIMHEFRL 97 
                              44678*************************************9758889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.691116IPR003441NAC domain
SuperFamilySSF1019412.35E-3818116IPR003441NAC domain
PfamPF023654.1E-152497IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTSVFSDVML NLSSDHQVAK LNSKEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV  60
FDLQTGALIG MRKTLVFYKN RAPHGIKTGW IMHEFRLKNP HIPPKEDWVL CRVFFKGTKD  120
ENINSINNES TSITSINIDN HEATMPKILP YGGCEYRSST MPNFSNNSIH QSQISSNNIQ  180
LSQEINKVIA NEIIHSKCGK EDEFGFLFDM NYFEESSLQG GVHSCLDEDM KFEDENSLVF  240
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-271911666165NO APICAL MERISTEM PROTEIN
1ut4_B1e-271911666165NO APICAL MERISTEM PROTEIN
1ut7_A1e-271911666165NO APICAL MERISTEM PROTEIN
1ut7_B1e-271911666165NO APICAL MERISTEM PROTEIN
3swm_A1e-271911669168NAC domain-containing protein 19
3swm_B1e-271911669168NAC domain-containing protein 19
3swm_C1e-271911669168NAC domain-containing protein 19
3swm_D1e-271911669168NAC domain-containing protein 19
3swp_A1e-271911669168NAC domain-containing protein 19
3swp_B1e-271911669168NAC domain-containing protein 19
3swp_C1e-271911669168NAC domain-containing protein 19
3swp_D1e-271911669168NAC domain-containing protein 19
4dul_A1e-271911666165NAC domain-containing protein 19
4dul_B1e-271911666165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-149HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160122.11e-153PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE61e-44NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM1CE891e-152M1CE89_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655591e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-59NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]