PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_20235.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 138aa    MW: 15558.1 Da    PI: 5.7205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_20235.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-211868255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +g+++AeIrd   n+k +r++lg++ taeeAa+a+++a+++++g
  Sme2.5_20235.1_g00001.1 18 KYRGVRKRP-WGKYAAEIRDT--NNKGARVWLGTYATAEEAARAYDKAALEMRG 68
                             8********.**********4..3456*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1051876IPR001471AP2/ERF domain
CDDcd000181.64E-291877No hitNo description
SMARTSM003803.8E-361882IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-231878IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-311878IPR001471AP2/ERF domain
PfamPF008471.4E-151868IPR001471AP2/ERF domain
PRINTSPR003673.0E-111930IPR001471AP2/ERF domain
PRINTSPR003673.0E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDEDNSNIMN KETCAEVKYR GVRKRPWGKY AAEIRDTNNK GARVWLGTYA TAEEAARAYD  60
KAALEMRGRF AVLNFPHEYP SLSSDHSSSS SSSSSSSSTS YSSLHNGNEV KQVIELEYLD  120
DKLLEDLLGL EYNKSQYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-331812314114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754483e-69HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755213e-69HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567930.12e-59PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G2X5X71e-58A0A2G2X5X7_CAPBA; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000913471e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-22ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]