PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_19951.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 604aa    MW: 69866 Da    PI: 8.745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_19951.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.63.4e-1251273128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k.....kvkaeekewy.fFskrdkkyatgkrknratk 79 
                               G+rF P+d+e++ ++L + v++++++   +  +++d+y   ePw++  +      ++ ++++ y +F+++        ++nr+ +
  Sme2.5_19951.1_g00001.1   5 EGYRFYPSDSEIL-KFLLRFVAKQEMHDGGFiTTNIDVYGQqEPWEIYnQgvpsgGLDDDDDSSYrYFITK--------KSNRIDH 81 
                              69**********9.8888888888877767735566*996549****733555553333444444133332........4689889 PP

                      NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +Wk++ + k v+  + ++    ++ + yk++    e  +W+m+ey+l
  Sme2.5_19951.1_g00001.1  82 GCFWKQQDEGKLVHY-NMHNSSSTTIVIGYKKKM--HEDGHWIMKEYQL 127
                              99******9999999.555555555555564433..3589*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.0233150IPR003441NAC domain
SuperFamilySSF1019416.93E-125144IPR003441NAC domain
PfamPF023652.2E-95127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEQKEGYRFY PSDSEILKFL LRFVAKQEMH DGGFITTNID VYGQQEPWEI YNQGVPSGGL  60
DDDDDSSYRY FITKKSNRID HGCFWKQQDE GKLVHYNMHN SSSTTIVIGY KKKMHEDGHW  120
IMKEYQLSMA ILLKFEEDRR DYVLSTSSSK RYPTPSRSTT KQTSPELIPE SVSSTFKENS  180
KKVHGVDFNL NIPKVYIMNL NLPPSPTASD MRPTHTRQDS LGVLTSSDEF TINRDLIREW  240
WNDWYVSTKY KPSTSIPDKP HSYIPDKPST SSPNIETNPI FKVPEFSREN YPKLSAEFSQ  300
SSDLLDKINQ ELSKLNISRG EVSTRLTRQD WHPHKRNFYS KPRGVFDGSS IIAWNLDGMA  360
EEQIYNLLQK MGIAVTAYKL KGAGDKQSAT MLIAGFTGNL KNWWNNYLTD GDKNAIQNSA  420
TTKMVVKTEG GMERSSEEIV EDATTTLLYC IAKNFIGEPK LFQDRNLEIL NNLYCKRLTD  480
FRWYKDMFLS KVMIRPDCSN DYWKERFLSG LPSLFAEKVR TKIRDRYNGK IPYPQLSYGD  540
LIRTINMVAT DLCTDLKLEE QLKKDPRKTA HELESFCQDF GFAVLKPPSA RKPGKKERRG  600
KYND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540640.11e-107PREDICTED: uncharacterized protein LOC107841160
TrEMBLA0A1U8EBF51e-105A0A1U8EBF5_CAPAN; uncharacterized protein LOC107841160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.17e-06NAC domain protein 66