PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_18033.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 313aa    MW: 35227.3 Da    PI: 7.5932
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_18033.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.8e-32131184255
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sme2.5_18033.1_g00003.1 131 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 184
                              9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15128185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28129185IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-24131184IPR006447Myb domain, plants
PfamPF002495.0E-7132183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRDAMLSTVP DLSLQISLPS CILRNDEYKE VVGFDSTTDS GSSASGGSDL SHENTGPFHP  60
EIKKSFNNLP FFPSFEPSLS LGFAQVAIGK NVQHHYHNHH QYQHYKPQIY GHDFKRSSRL  120
ISGVKRSVRA PRMRWTSTLH AHFVHAVQLL GGHERATPKS VLELMNVKDL TLAHVKSHLQ  180
MYRTVKSTDK ATAKKQGENI FMNQNNGINN GEYEKSYEEI DALSQPSTIP QNMVHMRDPS  240
SFIPDQTNAW SHSNRERPFP NYPHIYSNMD GIETANNLSS DDTLLDLEFT LGRPSWKMGQ  300
AGSSSNDSTL LKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17132186458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886642.10.0probable transcription factor KAN4
TrEMBLM1AUD30.0M1AUD3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000305180.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122621822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-53G2-like family protein