PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_16290.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 316aa    MW: 36487.7 Da    PI: 8.9535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_16290.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-11246289344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                              +WT+ E +++ +a + + ++   +W+ Iar++g g+t +++k ++
  Sme2.5_16290.1_g00001.1 246 AWTPRENKKFEQALAIYDKDtpdRWHNIARYVG-GKTVEEVKQHY 289
                              7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509948.761194IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.107.6E-10393IPR012337Ribonuclease H-like domain
SuperFamilySSF530984.55E-14493IPR012337Ribonuclease H-like domain
PfamPF006652.0E-10595IPR001584Integrase, catalytic core
PfamPF077273.2E-7132193IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profilePS5129312.846242297IPR017884SANT domain
SMARTSM007172.1E-10243295IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-13246300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5246290IPR009057Homeodomain-like
PfamPF002491.6E-8246289IPR001005SANT/Myb domain
CDDcd001674.57E-9246289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MENVLDLIHS DMCGPLSKSL GRARYFVTFI DDHSRKTWAY TIKSKDQVLG VFKQFHVSVE  60
RETGKNIKCV CTDNSGEYIG SFHAYCKKHA FVHVPKDERQ KLDVKTWQCV FIGYGQDEFG  120
YMFYDPVHKK LIRSLDVVFI EDQTIKDINK ADKEGFTPTD DSTSLRLKKN LYGLKSPPRQ  180
WYKKFESVIR EQDKAKAVSC PLDNHFKLSS RMCPSTDKEK EEMVRIPYAS AVGCLMNIMA  240
SNSLTAWTPR ENKKFEQALA IYDKDTPDRW HNIARYVGGK TVEEVKQHYA ILVEDVRHIE  300
SGDVPFPKYK SAGKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-28239313177RADIALIS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153633e-86AC215363.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0030A21, complete sequence.
GenBankAC2153783e-86AC215378.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0074A14, complete sequence.
GenBankGU0488913e-86GU048891.1 Solanum lycopersicum clone BAC CaCM303O04-Tomato, complete sequence.
GenBankHG9755143e-86HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-31RAD-like 6