PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_15948.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 509aa    MW: 56671.2 Da    PI: 6.3182
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_15948.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer43.47.9e-143103412759
              ZF-HD_dimer  27 EfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                              Ef+ps geegt+ alkCaAC CH nFHR+e ++
  Sme2.5_15948.1_g00003.1 310 EFLPS-GEEGTPGALKCAACSCHQNFHRKEIDD 341
                              9***9.999********************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF141117.3E-7182259IPR025558Domain of unknown function DUF4283
ProDomPD1257747.0E-8310340IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-12310339IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRNRSVTCIL PCSGHGIDEI NQKMDFCSRM KSYCTDSEDG VSSPIKCESS KLRSSVGISC  60
RGFSGLSSAP CGTAGRVPSV MYESSSMCST DSVPLRGTCL NHNNLKSYSR MWNYGSKSTS  120
EATDLACETL SQPLYALSIV EHHENQKSGP PMEVRHSNYM EYPTVTFPRK SGESLDEPDM  180
DSSIGNFSYR RPKMKQIRAD FRAQNPLNGQ VKIRHCTYRQ VLLLFTNEED YYTVLYRKTF  240
ILAGALMQIS WPSPDFHHEA KQNIDPDFRL SDANPVNWST DTSKLHPCIN GLPAPAIDEK  300
SMSLQLPAVE FLPSGEEGTP GALKCAACSC HQNFHRKEID DHQQMADVGS HSTFSQLRNN  360
SSCGSIQKLA PLSLPTQQLQ QYHHNFSNSC SPSSLVNSLE LISQPPSPKS RQGLERIEPS  420
SIQPSDSYEM VNHDTMQIGK QQEYSWRDNN RAPDNIPLDF PACSSRCQSQ SVFTDEFPHL  480
DIIDNLLGEE HGTVQTSMSN SGFQSLSNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354529.11e-146PREDICTED: uncharacterized protein LOC102604540
RefseqXP_010326742.11e-146PREDICTED: uncharacterized protein LOC101258410 isoform X1
RefseqXP_010326743.11e-147PREDICTED: uncharacterized protein LOC101258410 isoform X3
TrEMBLA0A0V0IT951e-147A0A0V0IT95_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000442701e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14101810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-11homeobox protein 33