PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_15542.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 240aa    MW: 28191.6 Da    PI: 5.439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_15542.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12152195654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sme2.5_15542.1_g00001.1 152 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 195
                              589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15149208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-4153195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MELTQQDFFE AESWNNTTFA NAWNIESPTF YQENPESNSS LLGLMMSPSQ SNYFPCHDFQ  60
ESSYPFLDSF TAPLQLIHSS TYNNSIIEER TMVEEGQIGH FTNDFHGHYE DSISCYNNIK  120
MEQVANSRIV GEKKSRSNYK VKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD  180
RTSILGDTID YVKELLDKIN RLREENEMED EIKDLNFMGN FKELKPYEGF VRNPPKWQLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154161ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357756.21e-119PREDICTED: transcription factor bHLH93
TrEMBLM1D0J11e-119M1D0J1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786751e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-34beta HLH protein 93