PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13991.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 105aa    MW: 12264.6 Da    PI: 6.5212
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13991.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.71.4e-0967105351
                  G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                               ++Wt++LH++F+ +           Pk+i elm+   Lt+ +v+SHLQ
  Sme2.5_13991.1_g00001.1  67 YIEWTEDLHAKFMGC----------YPKNIHELMNSAALTRMQVASHLQ 105
                              579*********854..........5**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-763105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-864105IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-865105IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MRSEKEREGL GNNNIVGEDE ESREEESNNI HEAENDIVLN GRYKPRKKTS RKSMKEINEG  60
GSWRKNYIEW TEDLHAKFMG CYPKNIHELM NSAALTRMQV ASHLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168890.14e-23PREDICTED: two-component response regulator ARR1-like
TrEMBLM1A1889e-22M1A188_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000124262e-22(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.52e-06ARR-B family protein