PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13814.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 156aa    MW: 18261.3 Da    PI: 9.939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13814.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.3e-1073119354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + h+ + r RR++i +++  L++l+P       +K++ a++L +Av+Y+k L
  Sme2.5_13814.1_g00002.1  73 EPHSVAARHRREKISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 119
                              5699999*******************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.17170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1571129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1572130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-1172124No hitNo description
PfamPF000105.0E-773119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-1376125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDITQSLNNI EMIHLLPIHN SSSIDHHEPM LAPWSSMEAM REMIFRVAMM QPINIDPESV  60
KPPKRRNVKI SKEPHSVAAR HRREKISERI RILQRLVPGG TKMDTASMLD EAVHYVKFLK  120
KQIKSLEQAA CFKDNNNQWP NVDYYSRYLM SPMFKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610959.12e-66PREDICTED: transcription factor HEC2-like
SwissprotQ9FHA72e-45HEC1_ARATH; Transcription factor HEC1
TrEMBLK4BG656e-69K4BG65_SOLLC; Uncharacterized protein
STRINGSolyc03g044460.1.12e-68(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-46bHLH family protein