PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13712.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 344aa    MW: 38509.4 Da    PI: 4.3216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13712.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11178221654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sme2.5_13712.1_g00001.1 178 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 221
                              589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-15175240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9178221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-5179225No hitNo description
CDDcd048733.28E-5270311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEYYNENGFL EEVLYLISDS WDTTNVVPME MSDFYNNVLN HDSSSFVENN NVTLPCSSFE  60
GYSCNLPFDQ QSLINCSTSF YSPFCDELSP PSSFPSQEDF SSILDDEVGN YSFQNLEMGN  120
ISNNNNNNNV VIPCKLEEIQ VCEGAGGGGG ASSFNIGLCP EIRKTKSKKI DGQPSKNLMA  180
ERRRRKRLND RLSMLRSVVP KISKMDRTSI LGDTIDYMKE LLEKINNLQE EMELEPNQLS  240
LMSIFKDVKP NEMLVRNSPK FDVERRGVDT KVEICCAGKP GLLLSTVTTL EALGLEIQQC  300
VISSFSDFAM QASCSEEMEQ RGVVSSEDIK QALFRNAGYG GKCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180187ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-175HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571505.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL18e-85BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1U8GK240.0A0A1U8GK24_CAPAN; Transcription factor bHLH93
TrEMBLA0A2G2ZR030.0A0A2G2ZR03_CAPAN; transcription factor bHLH93-like
STRINGSolyc00g050430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-87beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]