PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13527.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 463aa    MW: 48191.4 Da    PI: 6.297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13527.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12269314555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sme2.5_13527.1_g00001.1 269 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 314
                              99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.40E-13262318No hitNo description
SuperFamilySSF474595.63E-17262324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16266323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MQAMNSLLSQ QQQSQMSLQD LQNGGNDGSS GGIIGGLLSQ QIGHSHFDPA SSHDDFLEQI  60
LSSVPSSSPW PDLSKSWDPH HHLSSPPPPL HNPSSGEDQP PPNPLHQQFH FDDQASSLLA  120
SKLRQHQITG GGGAAAKALM LQQQILLSRT LAGNGLRSPT AASGDNGLLS LPVNLSNGDH  180
NDSVSNPAND SSVQALFNGF TGSLGQTSNQ PQHFHHPQGG SMQSQSFGAP AINQTPAASG  240
SAGGGGTTPA AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA  300
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGRGEGNVG RVGNGTTSSS  360
NNDTMTVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCQS RNPMMPNGIG  420
GETGGPTSPS LSALTVQSAT IGNATGAGIH DPSINDVPSL SEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343666.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG92e-94BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0V0I6Q30.0A0A0V0I6Q3_SOLCH; Putative transcription factor bHLH66-like
STRINGPGSC0003DMT4000289170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-70LJRHL1-like 1