PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12868.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 257aa    MW: 28949.2 Da    PI: 6.799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12868.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-2194143255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r+++ +g+W+AeIrdp     +  r++lg+f tae+Aa+a+++a+k+++g
  Sme2.5_12868.1_g00001.1  94 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEDAARAYDQAAKRIRG 143
                              8********.**********94....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-4094157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3394153IPR001471AP2/ERF domain
PROSITE profilePS5103224.23694151IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2394153IPR016177DNA-binding domain
PfamPF008474.2E-1494143IPR001471AP2/ERF domain
CDDcd000181.07E-3294150No hitNo description
PRINTSPR003671.1E-1195106IPR001471AP2/ERF domain
PRINTSPR003671.1E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCGGAIISDY EPVGNFYRKL SARDLWAELD PVSDYWSSSS SSSTVGKADS SHSPTIHSVD  60
KPKKSDSGES NQLRKGRSVK VEKEMSEPRQ RKNKYRGIRQ RPWGKWAAEI RDPQKGVRVW  120
LGTFNTAEDA ARAYDQAAKR IRGDKAKLNF PHSPPTPTPS PPAKRQCIDP PPPAFLESSH  180
IMSDHNSSLG YQNQTPYYPM EMPAVNDDYE LKEQISNLES FLELEPADSS QFSGMVHSDP  240
LNVFLMEDFA STQQQFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2495151360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0858201e-140AB085820.1 Solanum tuberosum cip353 mRNA for AP2/ERF-domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305557.11e-140ethylene-responsive transcription factor RAP2-3
TrEMBLM1BEF01e-142M1BEF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000433111e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-43ethylene-responsive element binding protein