PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12406.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 660aa    MW: 74844.5 Da    PI: 5.9145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12406.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12474516855
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               ErrRR++iN++f  L ++lP+       K++K++ L +++e++k+L+
  Sme2.5_12406.1_g00003.1 474 SERRRREKINERFMHLASILPTG-----SKVDKISLLDETIEHMKELE 516
                              6*********************5.....5****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-3615234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.091466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-15471530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-15472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-15473528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-12473520No hitNo description
PfamPF000101.6E-9474516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAMGHQDQDG VPDNLRKQLA LAVRGIQWSY AIFWSIPFTE PGVLKWSDGY YNGDIKTRKT  60
VQAGEVNENQ LGLQRTEQLK ELYSSLLTGE SEDDIQPQAK RPSASLSPED LTDTEWYFLV  120
CMSFVFSVGQ GLPGKTFVTN ETIWLCNAHQ AESRVFSRSL LAKASIWFMY QLFNCNLSLK  180
GVHLVDFGSI KFECIYPGTP HSLPSEKTVI QTEIKYDELV IEDPNLIQQI KNYFLVVDHS  240
IISKKPNYVS NDAKYDTNVV FQKPDHNALG SDAYPVENNY SSPHDSSNGF VANQEAEDSL  300
MVVDVIGETS QAQSWKFMDD NMSNEANNSF NSSDCISQNN ANCEKLSPLS SGEKETKFRL  360
LDRQENDQKK PHLLDHQRDD AQYQAVLSIL LKSSDQLTLG PHFRNINKKS TFVGWKNDIQ  420
MPRLGTAQKL LKKVLLEVPR MHGGVVHQFS RENGKKNSLW RPEVDDIDRN CVISERRRRE  480
KINERFMHLA SILPTGSKVD KISLLDETIE HMKELERRVQ ELEARSARRS NDTAEQTSDN  540
CGTSKFNDIR GSLPNKRKAC DMDEMEPESC NGLLKRSSAD NIVINMIDKE VSIKMSCLWS  600
ESLLLKIMEA LTDLQMDCHT VQSSNIDGIL FIAIECKSSR SKTVAVGTIR EALQRAVWKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-111614812138Transcription factor MYC3
4rqw_B1e-111614812138Transcription factor MYC3
4rru_A1e-111614851177Transcription factor MYC3
4rs9_A1e-111614812138Transcription factor MYC3
4ywc_A1e-111614851177Transcription factor MYC3
4ywc_B1e-111614851177Transcription factor MYC3
4yz6_A1e-111614812138Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474479ERRRRE
2475480RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0065020.0KP006502.1 Solanum melongena anthocyanin-related transcription factor GL3 mRNA, complete cds.
GenBankKF7274750.0KF727475.1 Solanum melongena cultivar Zi Chang anthocyanin bHLH transcription factor (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275132.10.0transcription factor GLABRA 3-like
TrEMBLA0A0A0QLN60.0A0A0A0QLN6_SOLME; Anthocyanin bHLH transcription factor
STRINGSolyc08g081140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-153bHLH family protein