PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12177.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 362aa    MW: 40615.5 Da    PI: 4.634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12177.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10165207754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              ++ErrRR+r+N +++ Lr+++Pk +      K++  +iL  +++Y k+L
  Sme2.5_12177.1_g00001.1 165 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 207
                              79*********************66......**************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14162227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00163165217No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEDYYRENGN LLDELFALRS DLWESTCLPM EMDSSNFYCN NNNYDCFGDI PLSSSTTTTT  60
TTTTTTTSFE DYNTNFPIDQ SQHCSLLLGG LPPQEMFISP FSSQVEDLSS IFEVGNFGNC  120
KLERTQSTES SAAIAPANFN NIGLLCPNKK AKTNKSNGEP SKNLMAERRR RKRLNGRLSM  180
LRSIVPKISK MDRTSILGDT IDYTKELLEK INNLQQEMEL GPSELSLMSI FKNEKPIEMF  240
VRNSPKFNVE RRNNIDTRVE INCAGKSSLL LSTLTTLDAF GLEPQQCVIS CFNDFAMQAS  300
CSEGGTEQVE NEKNHHVEQG GFMQNGSMRD SAEQEVEQRG VINAEEIKQA LFRNAGYAGK  360
CI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-67HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-67HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060938.11e-155transcription factor bHLH93-like
SwissprotQ9LSL11e-61BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1U8ERP31e-130A0A1U8ERP3_CAPAN; transcription factor bHLH61-like
STRINGSolyc12g088130.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-57beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]