PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12132.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 232aa    MW: 25728.5 Da    PI: 10.0346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12132.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-125096354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             ++h+e+ErrRR+riN  +++Lr l+P++      K++Ka+ L k+v  +k+L
  Sme2.5_12132.1_g00002.1 50 KSHSEAERRRRQRINAHLSTLRNLVPSS-----DKMEKAALLAKVVYQVKQL 96
                             58*************************8.....7**********99888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5774796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1250103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-105096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.73E-105098No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1351104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-1053102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.596133210IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.8E-5135191No hitNo description
CDDcd048731.05E-8135200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNLGESRKNE AKGAVQSLVL DSEKGELVKA SGRVEKKVAK TEGKTLAALK SHSEAERRRR  60
QRINAHLSTL RNLVPSSDKM EKAALLAKVV YQVKQLKQTA TRVSENFIIP LDSDEVRVEI  120
IAENAIDGTC LYRASICCEY RPHLLSDLKE IINSLHVNLV KSEISTLGNR VKNVFVFTNG  180
GHANIEAFIS TVRQAFSSVL DKASASPEYS VYPNKRQRVS CFHSSTLFSS PL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755142e-99HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBankAC2153882e-99AC215388.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0122E16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362421.11e-137PREDICTED: transcription factor bHLH30-like
TrEMBLM1AN651e-137M1AN65_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000264491e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-34bHLH family protein