PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11931.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 377aa    MW: 41493.3 Da    PI: 5.2687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11931.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12328373655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el P+     +k  + a++L +Av+YIk+Lq
  Sme2.5_11931.1_g00001.1 328 SIAERMRRTRISERMKKLQELFPNM----DKQTNTADMLDLAVDYIKDLQ 373
                              689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.545322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14325377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-12326377No hitNo description
Gene3DG3DSA:4.10.280.106.1E-13327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDKLNSFLFS CGDGGGGGSS SFKNGEGVES EFLRSKEMMG SDYFHQQSQF QQSNFGGLAR  60
YKSAPSSFFA GILDGDGNNS GENFITHDGS SSSDSDSMFT ALLNNNDNGT ISGTRDLNEQ  120
NQKNQLQFAS SMKQEIGEEI EFGNENGVQN RYENVGVSYG VGVQMQTRDS LSNGNGGSNL  180
IRQSSSPAGF FNGFMREVSN FGASVGTNRE ASTSANGFSN HISYSTAQSS SSNFMPSIAE  240
NESWNDSSFN SLKRNRDGDL KMFSNNFSGM PNQNDESRNY TSSGLTTHLS LPKTSSEMAS  300
IEKYLQFQPD FVPCKIRAKR GCATHPRSIA ERMRRTRISE RMKKLQELFP NMDKQTNTAD  360
MLDLAVDYIK DLQKQVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-177HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229606.10.0transcription factor bHLH130
TrEMBLM1CDA40.0M1CDA4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000650290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-59bHLH family protein