PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11653.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 458aa    MW: 51733.6 Da    PI: 8.8836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11653.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13283328454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY+ sL
  Sme2.5_11653.1_g00001.1 283 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLACTTEYLASL 328
                              68899********************97.....8***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-12279333No hitNo description
SuperFamilySSF474591.11E-16280348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16283348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-14285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSSGGIYNGK NDVAQRLFEE YKHSWLIMDN GRIPGLAFKN NLPYIELQFA DLQSHASNAV  60
QLQFYHEAGI KTTICMGCSI GEIEFGMTSR PPVNLEMGMK NLFPEYFSTR SGLPHHQTVL  120
PIDQNRPSPS SSFSLDSPGE YPSLLFNVAS TSYVPEPHAF SEQTIRPVST TDMTYHQIRG  180
IQFPRVETED AALTRAYLAV MTSPSTSSSS QQSRENINVP KDHYQKPTAF RRFRSGNVQI  240
GATRTTTRRE NMLRRSITFF RNLNMMRRQD QQIQRAPTST QVHHMISERR RREKLNDSFQ  300
LLRSLLPPGT KKDKASVLAC TTEYLASLKG QVEEFSKKNE RLEAELVKAE MRSDGIIRSC  360
SDGNERVVVK ITNVGESSLS ESRVVELQVS VRGECSVLDL AIRLLQFLKT HSHLTLDSVA  420
ANTSSMLTRI TLRIRIQGSE WDESAFEEAA KRVVDDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292ERRRRE
2288293RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579365.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLK4CDT30.0K4CDT3_SOLLC; Uncharacterized protein
STRINGSolyc07g039570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-59bHLH family protein