PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11242.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 215aa    MW: 24797.5 Da    PI: 5.7765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11242.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-1972122255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +ykGVr+++ +g+++AeIrdp  +g  +r +lg++ t+e+Aa a+++ + +l+g
  Sme2.5_11242.1_g00004.1  72 KYKGVRRRP-WGKYAAEIRDPDRRG--ARLWLGTYETPEDAALAYDRTAFRLRG 122
                              8********.**********95454..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3071131IPR001471AP2/ERF domain
CDDcd000181.01E-3172132No hitNo description
PROSITE profilePS5103224.07872130IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2272131IPR016177DNA-binding domain
PfamPF008472.5E-1372122IPR001471AP2/ERF domain
SMARTSM003808.2E-3672136IPR001471AP2/ERF domain
PRINTSPR003671.6E-97384IPR001471AP2/ERF domain
PRINTSPR003671.6E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQGMISLDNF DQNFLDTMQH FFNDPDFSQI LSEIQTPRQY STTCDDQNTI FEQNLVQENQ  60
TEKTEATIPL RKYKGVRRRP WGKYAAEIRD PDRRGARLWL GTYETPEDAA LAYDRTAFRL  120
RGPKAVLNFP HLIESNVTEI NRVKPRRRPR SPEICSEFSS SPHLGDNNNN NTDGPSSKRR  180
NVDLINTLAT ANNLDTQSIM DTCLTSNYFF EISPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2971135468ATERF1
3gcc_A5e-2971135468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149KPRRRPR
2144150PRRRPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-90HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081434.22e-93ethylene-responsive transcription factor 13-like
TrEMBLA0A2G2XN617e-93A0A2G2XN61_CAPBA; Ethylene-responsive transcription factor 13
STRINGPGSC0003DMT4000670136e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-39ethylene-responsive element binding factor 13