PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11242.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 234aa    MW: 26181 Da    PI: 9.3617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11242.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-17102152255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y GVr++  +g ++AeIrdp   + k +r++lg++ t+e+Aa a+++a+ kl+g
  Sme2.5_11242.1_g00001.1 102 RYIGVRRRQ-WGTFAAEIRDP---NrKGARVWLGTYETPEDAAVAYDEAAFKLRG 152
                              699***887.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-30102161IPR001471AP2/ERF domain
PfamPF008471.6E-11102152IPR001471AP2/ERF domain
CDDcd000183.63E-28102162No hitNo description
SMARTSM003808.7E-34102166IPR001471AP2/ERF domain
PROSITE profilePS5103222.919102160IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22102161IPR016177DNA-binding domain
PRINTSPR003671.0E-10103114IPR001471AP2/ERF domain
PRINTSPR003671.0E-10142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNNPVHDDET FSSDFDVLES IKHHLLNDSD FSAFFSSMSY SSNVELPNSP TSIFGSVDNT  60
SLLETTPTKD HVVESRDKFD SKDQTRGLEV VRDEHAPQEW RRYIGVRRRQ WGTFAAEIRD  120
PNRKGARVWL GTYETPEDAA VAYDEAAFKL RGSKARLNFP HLAGSNISKP ARVKGSRRPH  180
SSGSSSSSYS STLSENGARK RKIDVINSIA RAKLVCHSLI KFTDVGVAMN KERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-25103160663ATERF1
3gcc_A8e-25103160663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348007.11e-100PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLM1CGJ76e-99M1CGJ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000670181e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-37ethylene-responsive element binding factor 13