PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11033.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 332aa    MW: 37726.5 Da    PI: 4.8131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11033.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09215260555
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +++ r+RR++i ++ ++L +l+P         +++ ae+L+ + +YIk Lq
  Sme2.5_11033.1_g00001.1 215 QSIAARQRRKKITDKTQKLGKLIPGgH------RMNTAEMLQATFKYIKFLQ 260
                              57889*******************955......9*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-11207268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-10208262No hitNo description
Gene3DG3DSA:4.10.280.101.7E-11209263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.919210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6215260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-9216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASVSYCSAA KLEPNVQEFD SEEMRIMQEL LFNFNYDVEP NFHENTDQDC YIDPFFNPDE  60
FILSFEMNNN SCFMPEYSVY EKQQDNCLPD NITTMTTHNS CFVPEYSVYE STTKRQKVIH  120
DNFLPNNIIA PSTHTPSFMP EYSVFASTPK RQEDNFLPPP SLGFVPNPPF FQDFASYSLS  180
EIPMPVFSSG CCNNAGAVAK KGGGNSSNEK KMSAQSIAAR QRRKKITDKT QKLGKLIPGG  240
HRMNTAEMLQ ATFKYIKFLQ AQAGLLEFMG SYEDEKSFHT SDLQKLVGST LIQEKLYSSE  300
KCLVPKVFLE ALENSQEFQN SLVLEEVKSL TR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-69HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541148.11e-157PREDICTED: transcription factor bHLH53-like
TrEMBLM1BV971e-156M1BV97_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000536511e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-22bHLH family protein