PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10879.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 579aa    MW: 67019.4 Da    PI: 8.8818
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10879.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-1079119343
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                              ++k++rr+++NReAAr+sR RKka++++Le+   +L +  +
  Sme2.5_10879.1_g00001.1  79 SDKVQRRLAQNREAARKSRMRKKAYVQQLEKSNLKLAQLEM 119
                              68****************************86555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-477140IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.10579123IPR004827Basic-leucine zipper domain
PfamPF001702.6E-780119IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-781116No hitNo description
Gene3DG3DSA:1.20.5.1709.7E-881124No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
PfamPF141442.0E-29168240IPR025422Transcription factor TGA like domain
SuperFamilySSF465653.66E-5427456IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.9E-6428459IPR001623DnaJ domain
PROSITE patternPS006360435454IPR018253DnaJ domain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNMSFTSTQF APTRRMGIFE PFHHMSMWED AFRGDIMPSA GACMVTPPND RADDKSGYTS  60
SEQLIPSGSE DNQAGKSISD KVQRRLAQNR EAARKSRMRK KAYVQQLEKS NLKLAQLEME  120
LERARQQGLY ILGSNGNMGL SSTINPGIAA FEMEYSLWVE EQQKKNVELR NVLQSHVSEM  180
ELQLLVETVL NHYYNLYRMK ADAAKADVFY LMSGMWRTSV ERFFLWIGGF KPSELINIVM  240
PQLEPLSDQQ IVKICNLRHC CQQAEDALTQ GMDKLQQTLA QNILTMTTGM GSYSSQMVSS  300
MEKLEALESF VNQYESDCPR NATQDIIVSH QNFEGFYKTS PVTVRVIKGY STINLCICER  360
DLLGKSAVRV STRSPNSVPR WTKPSVLQSW YHNSRRIETW DHRLNQQRKM VTSSAYNWND  420
SRGTLEEGET AEARFIKIQA AYELLIDEDE RRKYDKDNRV NPMKASEAWM EWLMKKRKAF  480
DQRGDMAIAA WAEQQQLELN LKARRLARSK MDPYEERRII AKERKAAVEN FNNTLKRHTL  540
VLRKRDIMRR KAEEEKKRVI SRLLAAEGLE LDEEDDKNL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060158.10.0transcription factor TGA1
RefseqXP_027769675.10.0transcription factor TGA1
RefseqXP_027769676.10.0transcription factor TGA1
SwissprotQ392371e-117TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A3Q7JC860.0A0A3Q7JC86_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000436510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-120bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]