PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10236.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 445aa    MW: 49121.1 Da    PI: 5.389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10236.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053423791254
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sme2.5_10236.1_g00005.1 342 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 379
                              677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-5340383No hitNo description
SuperFamilySSF474591.15E-11340394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9344386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGDEYEASVC GGNWWSSSRS IYGSSLCASS VPLGNSNFAW TNDHLLDMKS SCRSNDESGN  60
SDESVVLQEL PKHDSTLQIL GIGLNSSSTP DNWNHNTLMH GSDRGESNYS SIILQEDLNS  120
SMTYQQESGV DCSSDSFKQD FTLGMNHPIT SSTNTTDHDP STNTMISSTF PMNTSPFSNY  180
PTSLLQTLLD NDPPQQQLQP SLFASNNNQP MNFPTSSLNY RPDLNNFSSS LPKFPNSLLL  240
PKQTPSDHFP NYSINATASS LYNTSSATSL NNMRGNLLPS MHQQLLQSQT FNEKARVPEG  300
SSKCNVEEVR ESRVSKKSGN NEATVKRARI ETPSPLPTFK VRKEKLGDRI TALQQLVSPF  360
GKTDTASVLH EAIEYIKFLH DQVNVLSTPY LKNGSTPQHQ LNVDKVKEED LRSRGLCLVP  420
ISSTFPVATE TSTDFWTPNF GGAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232764.10.0transcription factor bHLH112
TrEMBLA0A3Q7FRQ90.0A0A3Q7FRQ9_SOLLC; Uncharacterized protein
STRINGSolyc02g079760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-57bHLH family protein