PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10149.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 438aa    MW: 49184.5 Da    PI: 7.3828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10149.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13246292354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  Sme2.5_10149.1_g00003.1 246 KNHVEAERQRREKLNNRFYALRSVVPNV-----SKMDKASLLANAVTYINEL 292
                              589************************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-3620170IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.602243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-18246311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-15246297No hitNo description
PfamPF000108.6E-11246292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18247311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-16249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQDILSTSSS SSPPSLLNTL QKRLQFIIQS RQEWWVYSIF WQASKDGNGR LIFSWGDGYF  60
HGTKDKVCIT SADNNNVGVG DTEMFYTVSA PSCFVLEDDL IVHTYSSGSY VWLNNYYELQ  120
IYNFDRAKEA HLHGIRTLLC VSTPHGVIEL GSADVIQENL EFVQLITSLF GLGKQINNNH  180
GLSRFNFAPL GDHNKDTKSN VEMLITGNKS SDSGNSDYDN ESSAIKYAHS PKKRGRKSNS  240
SSTTMKNHVE AERQRREKLN NRFYALRSVV PNVSKMDKAS LLANAVTYIN ELKAKVEEFK  300
AKVNELESSM KNQYQKPASR NTVQEMYDSP STSSAVVDRV NRINSSFAWC GNGAYGMEIE  360
VKIIGVEAMV RVHSPNVNYP CTRLMNVLSE LEFQIHHASV SCVKDMMLQD VVIGVPHNLI  420
NEEAIKSVIL TKLSVAYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-20181707192Transcription factor MYC3
4rqw_B1e-20181707192Transcription factor MYC3
4rs9_A1e-20181707192Transcription factor MYC3
4yz6_A1e-20181707192Transcription factor MYC3
5gnj_A1e-21247316873Transcription factor MYC2
5gnj_B1e-21247316873Transcription factor MYC2
5gnj_E1e-21247316873Transcription factor MYC2
5gnj_F1e-21247316873Transcription factor MYC2
5gnj_G1e-21247316873Transcription factor MYC2
5gnj_I1e-21247316873Transcription factor MYC2
5gnj_M1e-21247316873Transcription factor MYC2
5gnj_N1e-21247316873Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162598.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM1AWG40.0M1AWG4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-68bHLH family protein