PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10148.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 340aa    MW: 38977.1 Da    PI: 6.3552
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10148.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.95.5e-267023311186
                     GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                              a ++g++elaq ++  ++   +p g++++R+a+     L + + +      +    +++s    +   aa+k++ +++P++kf+h+
  Sme2.5_10148.1_g00003.1  70 ARENGHKELAQVIIRSIKGKINPLGESLERVASK----LFQEIED------QESYLRQES---NKIIEAAFKALCQIFPLVKFAHF 142
                              5577889999999999999999999999999986....4556666......111122222...3334458899************* PP

                     GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                              +aN+aI+e v  + +++Hi+D+d++ G+QWp++++a+ ++ +      i   ++++++++ + eet++rL ++A+++g++++ + +
  Sme2.5_10148.1_g00003.1 143 AANSAIMEVVPDDaQTIHIVDYDMGRGIQWPPIIEAIGQKGKAFSFASIKKTEEESTSDQWRFEETKRRLVNYANSFGLTLQVEEM 228
                              **********88879************************9988888788888888888************************9998 PP

                     GRAS 182 vakrl 186
                              ++++l
  Sme2.5_10148.1_g00003.1 229 TVEEL 233
                              66554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.05334340IPR005202Transcription factor GRAS
PfamPF035141.9E-2370233IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MIQSEILHNS WPLTNQIDPF YEDQDSTEIS FSDFTSLFPD YDFLTNLPID DLSFDDVSEW  60
FNDSETYGEA RENGHKELAQ VIIRSIKGKI NPLGESLERV ASKLFQEIED QESYLRQESN  120
KIIEAAFKAL CQIFPLVKFA HFAANSAIME VVPDDAQTIH IVDYDMGRGI QWPPIIEAIG  180
QKGKAFSFAS IKKTEEESTS DQWRFEETKR RLVNYANSFG LTLQVEEMTV EELASELRRM  240
KKRGKKSEWR RRPNPNGKLC KAGPISWHRH VQSLGTAQAC RAGANLGAKA RHWRQNLMQA  300
HRWHMNGHVV AYLKAQAISL GSKIGLDEFC RLSVVCFLCW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245RRMKKRGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169942.11e-102PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM1CJ591e-101M1CJ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000685071e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.18e-15GRAS family protein