PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09905.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 427aa    MW: 48955.4 Da    PI: 9.1566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09905.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-113890155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                             rr  h  +Er+RR+++   ++ Lr+llP       ++K s +e   +Av+YIk++q
  Sme2.5_09905.1_g00002.1 38 RRIIHRDIERQRRQEMSALYSSLRSLLPLrY---VKGKRSVSEHMHEAVNYIKEMQ 90
                             6888*************************77...9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-93694No hitNo description
PROSITE profilePS5088813.6563789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1038104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-83890IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1338106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00114395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.60.106.6E-4291315IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSQDVVMDYA CMDTPNMNSL AKRKIDTTTT NDDHFKLRRI IHRDIERQRR QEMSALYSSL  60
RSLLPLRYVK GKRSVSEHMH EAVNYIKEMQ ENIKELEKRR DLLMKSSIGN GKRFRDCRVT  120
VSPCVEGGIQ MSISADCELG KKFPLSTLLQ ELLKQGLNVV TCLSAKVNQT SLYTIQTQQQ  180
YREKGFKKYS EIISCLLVVE QNNELLLKNH ETRSIGYAPF PEANVASYMH FNPGQGHGRD  240
QSQDRGRGRN YRHEFHDSHP YHGGHPKNFS SHLKWKNNGV TIEKDKSGHN NKHFETICSR  300
CDGKNHWARN CRTPKHLVDL YLDSMKAANA PIKLDVPVRL VTKANESKSP LKRGRPIDFK  360
DKNPRKRKGA KNQDGHIEDE VTPEESSSII TNSIPEETQV PEICENKEIS IPEESSSIIT  420
NSIPEET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361367KNPRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-24bHLH family protein