PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09616.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 261aa    MW: 28406.6 Da    PI: 7.1473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09616.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11145192455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++++P +    +k   Ka iL + ++YI+sLq
  Sme2.5_09616.1_g00001.1 145 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALILDEIINYIQSLQ 192
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-10139196No hitNo description
SuperFamilySSF474594.84E-18139209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18141211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-11147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDPQASMMNH AGGFQSPPFN LAEIWQFPID AGGGVVMAYN VSAIPNNDPM VLDRRTTNSS  60
GGGGGGSARK RNEDDDSAKG VSTSGNGLTE SDCKRLKTTR SNEKSESRGD GEGNSGKSAE  120
QPAKPAEPPK DYIHVRARRG QATDSHSLAE RARREKISER MKVLQDIVPG CNKVIGKALI  180
LDEIINYIQS LQHQVEFLSM KLEAVNSRMP SIEGYPSKDF GQQTFDTNAM AFSSQATREY  240
ARGTSPEWLH MHLGGGFERT T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139790.0BT013979.1 Lycopersicon esculentum clone 133024F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357229.11e-170PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ69WS38e-80BH094_ORYSJ; Transcription factor BHLH094
TrEMBLM1C2931e-169M1C293_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000582041e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-88BIG PETAL P