PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09380.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 351aa    MW: 38140.3 Da    PI: 4.9697
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09380.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.6e-17176212135
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++Cgt +  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Sme2.5_09380.1_g00001.1 176 CHHCGTNEseTPAMRRGPSGPRTLCNACGLMWANKGM 212
                              ********9************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101712.63107149IPR010402CCT domain
PfamPF062032.1E-15107148IPR010402CCT domain
SMARTSM004011.6E-11170223IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12171218No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15174216IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.682174227IPR000679Zinc finger, GATA-type
CDDcd002022.51E-16175219No hitNo description
PROSITE patternPS003440176203IPR000679Zinc finger, GATA-type
PfamPF003204.1E-14176211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAAGNSRKM QGGQHGVAAF EEEYMNVPIR VDGYGGGGFE ADDISGSAGG GYEEAMNSGE  60
ELQVQAVMLL LGGSEMPSYV PSSNSVALQR TKSVDNDGLT RPHISPRMAS LIRFREKRKD  120
RCFEKTIRYN CRKEVAQRMH RKNGQFASLK EAEKSSSGNT NSGDSAVHPE PTLRRCHHCG  180
TNESETPAMR RGPSGPRTLC NACGLMWANK GMLRDITKGG RFGPTDKSEP GTLDIKLSTI  240
APENSYLKQH QEGSSGETKL TEENPSVTTF ELDRQEAADN FADSSPVGIG NSSVNIDEET  300
MILLVSYVAP LFSVDNLDEL ANASGTEFEI PANFDEQIGI DSHMVVHWPA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-54HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351716.10.0PREDICTED: GATA transcription factor 28-like isoform X1
RefseqXP_015166113.10.0PREDICTED: GATA transcription factor 28-like isoform X1
TrEMBLM1AQ440.0M1AQ44_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000277290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.14e-48ZIM-like 1