PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08287.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 59aa    MW: 6854.08 Da    PI: 10.8612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08287.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.75.8e-2025280129
                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              sgyWkatgkd+ v++  +g+l+g++ktLvfyk+rap+g kt W+mhe+rle
  Sme2.5_08287.1_g00001.1   2 SGYWKATGKDRIVFDLqTGALIGMRKTLVFYKNRAPHGIKTGWIMHEFRLE 52 
                              7************98758889****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.034159IPR003441NAC domain
PfamPF023652.3E-10251IPR003441NAC domain
SuperFamilySSF1019419.42E-22256IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MSGYWKATGK DRIVFDLQTG ALIGMRKTLV FYKNRAPHGI KTGWIMHEFR LENPHIPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-1425495145NO APICAL MERISTEM PROTEIN
1ut4_B7e-1425495145NO APICAL MERISTEM PROTEIN
1ut7_A7e-1425495145NO APICAL MERISTEM PROTEIN
1ut7_B7e-1425495145NO APICAL MERISTEM PROTEIN
3swm_A7e-1425598149NAC domain-containing protein 19
3swm_B7e-1425598149NAC domain-containing protein 19
3swm_C7e-1425598149NAC domain-containing protein 19
3swm_D7e-1425598149NAC domain-containing protein 19
3swp_A7e-1425598149NAC domain-containing protein 19
3swp_B7e-1425598149NAC domain-containing protein 19
3swp_C7e-1425598149NAC domain-containing protein 19
3swp_D7e-1425598149NAC domain-containing protein 19
4dul_A7e-1425495145NAC domain-containing protein 19
4dul_B7e-1425495145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754457e-71HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755187e-71HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240497.13e-36protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_015160122.12e-36PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE61e-21NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2G2WGT35e-35A0A2G2WGT3_CAPBA; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3Q7HJG66e-35A0A3Q7HJG6_SOLLC; Uncharacterized protein
TrEMBLM1CE896e-35M1CE89_SOLTU; Uncharacterized protein
STRINGSolyc06g008360.2.11e-35(Solanum lycopersicum)
STRINGPGSC0003DMT4000655591e-35(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-30NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]